LncBase Predicted v.2
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Please cite:
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, and Artemis G. Hatzigeorgiou "DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts" Nucl. Acids Res. (2016) gkv1270
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hsa-miR-515-3p


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Gene
miRNA
Score
DIANA Links
chr22-38_28785274-29006793.1
hsa-miR-515-3p
1.000
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623644
Biotype: lincRNA
Gene id: ENSG00000279978
Gene Name: chr22-38_28785274-29006793.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
126830-126845
0.026
4
9mer
84890-84914
0.018
1
8mer
26010-26033
0.007
2
8mer
112399-112418
0.007
0
8mer+wobble
170537-170552
0.006
1
8mer
140822-140833
0.006
0
8mer
114382-114400
0.006
1
8mer
111691-111706
0.005
0
7mer
132074-132099
0.005
1
8mer
55423-55442
0.004
0
8mer
57412-57438
0.004
Not Conserved
7mer
106907-106925
0.004
2
7mer
213009-213032
0.004
Not Conserved
7mer
99633-99656
0.004
2
7mer
8237-8252
0.003
4
7mer
94417-94432
0.003
1
8mer
213904-213925
0.003
1
7mer
35128-35139
0.003
3
7mer
232588-232605
0.003
0
7mer
208964-208986
0.003
2
8mer
217166-217190
0.003
1
7mer
152536-152552
0.003
0
7mer
133475-133497
0.003
2
6mer
172338-172356
0.003
3
6mer
13510-13536
0.003
2
6mer
169108-169128
0.002
1
7mer
83655-83675
0.002
1
7mer
82016-82027
0.002
1
6mer
193798-193817
0.002
0
7mer
258582-258599
0.002
0
8mer
226546-226568
0.002
1
6mer
188659-188684
0.002
1
6mer
165424-165432
0.002
4
6mer
81573-81596
0.002
6
8mer
242289-242313
0.002
0
6mer
23692-23705
0.002
1
6mer
154832-154852
0.002
1
6mer
137920-137944
0.002
1
7mer
264981-264998
0.002
2
6mer
7301-7315
0.002
2
8mer+wobble
100415-100440
0.002
0
6mer
6006-6024
0.002
2
6mer
46000-46022
0.002
1
6mer
242230-242248
0.002
1
6mer
52888-52907
0.002
4
6mer
156518-156541
0.002
Not Conserved
6mer
52321-52333
0.001
1
6mer
203613-203625
0.001
0
6mer
170998-171019
0.001
1
6mer
231858-231884
0.001
0
6mer
257306-257324
0.001
1
6mer
19562-19578
0.001
1
6mer
168510-168533
0.001
0
6mer
121992-122013
0.001
Not Conserved
6mer
148012-148025
0.001
0
6mer
256859-256877
0.001
0
6mer
264734-264760
0.001
1
6mer
4559-4585
0.001
1
6mer
181061-181074
0.001
0
6mer
260526-260539
0.001
0
6mer
85759-85783
0.001
1
6mer
45491-45504
0.001
1
6mer
236674-236700
0.001
1
7mer
152056-152081
0.001
1
6mer
187308-187334
0.001
0
6mer
257888-257908
0.001
3
6mer
234914-234940
0.001
0
6mer
128161-128182
0.001
1
6mer
24692-24717
0.001
1
6mer
229360-229386
0.001
0
6mer
85421-85437
0.001
1
6mer
140500-140526
0.001
1
6mer
14496-14522
0.001
0
6mer
162718-162742
0.001
1
6mer
103105-103118
0.001
1
6mer
261976-262002
0.001
0
6mer
146610-146619
0.001
1
6mer
259563-259576
0.001
1
6mer
121345-121371
0.001
1
6mer
38463-38476
0.001
1
6mer
241120-241146
0.001
1
6mer
107749-107770
0.001
1
6mer
238376-238402
0.001
1
6mer
235151-235169
0.001
1
6mer
65183-65195
0.001
0
6mer
9025-9051
0.001
1
6mer
63750-63767
0.001
1
6mer
75788-75801
0.001
1
6mer
215790-215804
0.001
2
6mer
248109-248122
0.001
0
6mer
192695-192708
0.001
0
6mer
238088-238101
0.001
0
6mer
221751-221777
0.001
1
6mer
234487-234513
0.001
0
6mer
118368-118390
0.001
2
6mer
223713-223739
0.001
0
6mer
212904-212917
0.001
1
6mer
11709-11722
0.001
1
6mer
231261-231274
0.001
0
6mer
249672-249698
0.001
0
6mer
45262-45275
0.001
1
6mer
206316-206342
0.001
0
6mer
142198-142223
0.001
0
6mer
213497-213509
0.001
0
6mer
230281-230307
0.001
0
6mer
239273-239288
0.001
1
6mer
153586-153599
0.001
0
6mer
203002-203015
0.001
Not Conserved
6mer
225290-225302
0.001
0
6mer
263323-263336
0.001
0
6mer
259264-259276
0.001
0
6mer
260670-260696
0.001
1
6mer
217559-217586
0.001
0
6mer
73268-73281
0.001
0
6mer
167835-167854
0.001
0
6mer
90873-90890
0.001
0
6mer
77387-77400
0.001
0
6mer
214992-215017
0.001
1
6mer
181368-181381
0.001
Not Conserved
6mer
90975-91001
0.001
1
7mer
214089-214113
0.001
Not Conserved
6mer
232609-232625
0.001
Not Conserved
6mer
214848-214862
0.001
0
6mer
240609-240631
0.001
Not Conserved
6mer
167922-167948
0.001
1
LINC01224
hsa-miR-515-3p
0.992
mTTBlnEmP

Gene Details
Chromosome: 19
Transcript: ENST00000596283
Biotype: lincRNA
Gene id: ENSG00000269416
Gene Name: LINC01224
UCSC graphic:
Expression:
  Cell Line Tissue Category
GM12878 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
388-403
0.084
1
6mer
2122-2135
0.005
0
BDNF-AS
hsa-miR-515-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 11
Transcript: ENST00000532965
Biotype: antisense
Gene id: ENSG00000245573
Gene Name: BDNF-AS
UCSC graphic:
Expression:
  Cell Line Tissue Category
SK-N-SH Brain Cancer/Malignant


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
491-506
0.082
14
7mer
38-53
0.005
1
XLOC_008866
hsa-miR-515-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: chr10
Transcript: TCONS_00018545
Biotype: transcript isomorph
Gene id: XLOC_008866
Gene Name: XLOC_008866
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Adrenal Normal/Primary
- Brain Normal/Primary
- Kidney Normal/Primary
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
178-191
0.024
0
6mer
108-121
0.013
1
6mer
85-104
0.012
1
6mer
359-372
0.008
0
6mer
290-303
0.008
0
6mer
340-365
0.008
0
6mer
250-263
0.007
0
6mer
159-183
0.007
0
RP11-324E6.10
hsa-miR-515-3p
0.991
mTTBlnEmP

Gene Details
Chromosome: 12
Transcript: ENST00000613543
Biotype: lincRNA
Gene id: ENSG00000274191
Gene Name: RP11-324E6.10
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
38-59
0.087
1
RP11-798M19.3
hsa-miR-515-3p
0.989
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000507803
Biotype: antisense
Gene id: ENSG00000248774
Gene Name: RP11-798M19.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
7mer
51-61
0.084
11
AC005537.2
hsa-miR-515-3p
0.988
mTTBlnEmP

Gene Details
Chromosome: 7
Transcript: ENST00000588324
Biotype: lincRNA
Gene id: ENSG00000232006
Gene Name: AC005537.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
K562 Blood Cancer/Malignant
SK-N-SH Brain Cancer/Malignant
h1ESC Embryonic Stem Cells Embryonic/Fetal/Stem/Progenitor
A549 Lung Cancer/Malignant


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
858-879
0.056
1
8mer
594-606
0.027
0
CTD-2013N24.2
hsa-miR-515-3p
0.987
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000601735
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
555-568
0.081
13
RP3-323A16.1
hsa-miR-515-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: 22
Transcript: ENST00000623959
Biotype: antisense
Gene id: ENSG00000279184
Gene Name: RP3-323A16.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
49198-49217
0.019
0
8mer
11846-11860
0.006
1
7mer
40262-40275
0.006
1
7mer
37569-37574
0.005
5
8mer
49417-49442
0.005
1
7mer
4807-4826
0.003
0
7mer
41816-41842
0.002
1
7mer
17111-17128
0.002
1
6mer
45447-45458
0.002
1
6mer
14512-14528
0.002
1
6mer
20933-20948
0.002
1
6mer
19912-19925
0.002
1
6mer
52107-52124
0.002
0
6mer
37316-37335
0.002
0
6mer
11040-11066
0.002
1
6mer
3203-3229
0.002
1
6mer
47348-47369
0.001
1
6mer
44984-45002
0.001
1
7mer
3766-3793
0.001
Not Conserved
6mer
39100-39122
0.001
0
6mer
44408-44433
0.001
1
6mer
30793-30806
0.001
0
6mer
28063-28089
0.001
1
6mer
9225-9251
0.001
0
6mer
17536-17559
0.001
Not Conserved
6mer
28463-28481
0.001
0
6mer
48164-48177
0.001
0
6mer
18433-18448
0.001
0
6mer
35459-35472
0.001
0
6mer
47374-47392
0.001
0
6mer
17174-17200
0.000
0
XLOC_003897
hsa-miR-515-3p
0.985
mTTBlnEmP

Gene Details
Chromosome: chr4
Transcript: TCONS_00007417
Biotype: transcript isomorph
Gene id: XLOC_003897
Gene Name: XLOC_003897
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Testes Normal/Primary


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1253-1267
0.074
8
6mer
1616-1629
0.005
0
EIF2B5-IT1
hsa-miR-515-3p
0.984
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000451348
Biotype: sense_intronic
Gene id: ENSG00000227509
Gene Name: EIF2B5-IT1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
22-42
0.078
5
RP11-599B13.3
hsa-miR-515-3p
0.983
mTTBlnEmP

Gene Details
Chromosome: 17
Transcript: ENST00000577807
Biotype: lincRNA
Gene id: ENSG00000263427
Gene Name: RP11-599B13.3
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
186-212
0.077
1
DKFZp451B082
hsa-miR-515-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: 6
Transcript: NR_033862.1
Biotype: lincRNA
Gene id: NR_033862.1 (gene)
Gene Name: DKFZp451B082
UCSC graphic: -
Expression: -


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-24
0.073
2
6mer
4379-4399
0.002
0
6mer
2465-2481
0.002
1
XLOC_005909
hsa-miR-515-3p
0.982
mTTBlnEmP

Gene Details
Chromosome: chr6
Transcript: TCONS_00011143
Biotype: transcript isomorph
Gene id: XLOC_005909
Gene Name: XLOC_005909
UCSC graphic: -
Expression:
  Cell Line Tissue Category
- Brain Normal/Primary
- Colon Normal/Primary
- Heart Normal/Primary
- Ovary Normal/Primary
- Prostate Normal/Primary
- Skeletal Muscle Normal/Primary
- Testes Normal/Primary
- Thyroid Normal/Primary


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
3-24
0.072
2
6mer
4725-4745
0.002
0
6mer
2811-2827
0.002
1
CTD-2013N24.2
hsa-miR-515-3p
0.981
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000597950
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
560-573
0.075
13
CTD-2013N24.2
hsa-miR-515-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596732
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
448-461
0.075
13
CTD-2013N24.2
hsa-miR-515-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000598783
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
529-542
0.074
13
CTD-2013N24.2
hsa-miR-515-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596274
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
350-363
0.074
13
RP11-576E20.1
hsa-miR-515-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 4
Transcript: ENST00000509964
Biotype: lincRNA
Gene id: ENSG00000250819
Gene Name: RP11-576E20.1
UCSC graphic:
Expression: -


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
1254-1268
0.069
8
6mer
1617-1630
0.005
0
CTD-2013N24.2
hsa-miR-515-3p
0.980
mTTBlnEmP

Gene Details
Chromosome: 3
Transcript: ENST00000596523
Biotype: antisense
Gene id: ENSG00000244513
Gene Name: CTD-2013N24.2
UCSC graphic:
Expression:
  Cell Line Tissue Category
HeLa Cervix Cancer/Malignant
LCLBAC - Normal/Primary


miRNA Details
Name: hsa-miR-515-3p
Sequence: gagugccuucuuuuggagcguu
MirBase ID: MIMAT0002827
Related Diseases:

Binding Category
Transcript Position
Binding Score
Conservation
8mer
283-296
0.074
13
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